Molecular phylogenetic study of the genus Catabrosa (Poaceae): a comparative analysis of the sequences ITS1-5.8S rDNA-ITS2 in the 35S rRNA genes
УДК 575.17:582.52
DOI:
https://doi.org/10.14258/pbssm.2019009Keywords:
Haplotype, intragenomic polymorphism, Poeae, water whorlgrassAbstract
A comparative analysis of the ITS1-5.8S rDNA-ITS2 sequences of the 35S rRNA genes in 20 speciesand morphotypes of the genus Catabrosa, which until recently was considered monotypic, was performed. Seven majorhaplotypes were identified, corresponding to individual species, groups of species, and some morphotypes. Hypothesesabout the subgenomic composition of polyploid species C. kneuckeri, C. minor, C. capusii, C. bogutensis and C. ledebouriiare proposed.
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References
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Цвелев Н. Н. Злаки СССР. – М.: Наука, 1976. – 788 с.
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Шнеер В. С., Пунина Е. О., Родионов А. В. Внутривидовые различия в плоидности у покрытосеменных и их таксономическая интепретация // Бот. журн., 2018. – Т. 103. – № 5. – С. 555–585.
Bor N. L. Flora Iranica: Gramineae // in Rechinger, K. H. (ed.), 1970 – 573 p.
Brysting A. K., Fay M. F., Leitch I. J., Aiken S. G. One or more species in the arctic grass genus Dupontia? – a contribution to the Panarctic Flora project // Taxon, 2004. – Т. 53. – №. 2. – С. 365–365.
Darriba D., Taboada G. L., Doallo R., Posada D. jModelTest 2: more models, new heuristics and parallel computing // Nature methods, 2012. – Т. 9. – №. 8. – С. 772.
Gillespie L. J., Soreng R. J., Bull R. D. et al. Phylogenetic relationships in subtribe Poinae (Poaceae, Poeae) based on nuclear ITS and plastid trn T–trn L–trn F sequences //Botany, 2008. – Т. 86. – №. 8. – С. 938–967.
Huelsenbeck J. P., Ronquist F. MRBAYES: Bayesian inference of phylogenetic trees // Bioinformatics, 2001. – V. 17. – I. 8. – P. 754–755.
Kumar S., Stecher G., Tamura K. MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets // Molecular Biology and Evolution, 2016. – V. 33. – I. 7. – P. 1870–1874. DOI: 10.1093/molbev/msw054.
Müller K. SeqState: primer design and sequence statistics for phylogenetic DNA datasets // Appl Bioinformatics. – 2005. – V. 4. – I. 1. – P. 65–69.
Nicora E. G., Agrasar Z. R. Catabrosa P. Beauv. y Phippsia R. Brown (Gramineae) en America del Sur. // Darwiniana, 1981. – Vol. 23, № 1. – P. 179–188.
Nosov N. N., Punina E. O., Machs E. M, Rodionov A. V. Genomic composition of polyploid species in the genus Catabrosa P. Beauv. (Poaceae) as revealed by molecular phylogenetic analysis // Skvortsovia, 2017. – Vol. 4. – № 1. – P. 18 – 21.
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Punina E. O., Machs E. M., Krapivskaya E. E., Rodionov A. V. Polymorphic sites in transcribed spacers of 35s rRNA genes as an indicator of origin of the Paeonia cultivars // Russ. J. of Genetics., 2017. – V. 53, № 2. – С. 202–212.
Punina E. O., Nosov N. N., Myakoshina Y. A. et al. New octoploid Catabrosa (Poaceae) species from Altai // Kew Bulletin, 2016. – V. 71. – № 3:35. DOI 10.1007/S12225-016-9646-5
Rodionov A. V., Dobryakova K. S., Punina E. O. Polymorphic sites in ITS1-5.8S rDNA-ITS2 region in hybridogenic genus × Elyhordeum and putative interspecific hybrids Elymus (Poaceae: Triticeae) // Russ. J. of Genetics, 2018. –V. 54, № 9. – С. 1025–1039.
Soreng R. J., Fish L. Catabrosa versus Colpodium (Poaceae: Poeae) in southern Africa, with a key to these genera and their species in Africa // Kew. Bull., 2011. – Vol. 66, № 1. – P. 101 – 110.
Soreng R. J. Peterson P. M., Romaschenko K. et al. A worldwide phylogenetic classification of the Poaceae (Gramineae) //Journal of Systematics and Evolution, 2015. – Т. 53. – №. 2. – С. 117–137.
Soreng R. J. Peterson P. M., Romaschenko K. et al. A worldwide phylogenetic classification of the Poaceae (Gramineae) II: An update and a comparison of two 2015 classifications //Journal of Systematics and Evolution, 2017. – Т. 55. – №. 4. – С. 259–290.
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Published
2019-07-03
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Section
Molecular methods in the study of plants and chemosystematics
How to Cite
Molecular phylogenetic study of the genus Catabrosa (Poaceae): a comparative analysis of the sequences ITS1-5.8S rDNA-ITS2 in the 35S rRNA genes: УДК 575.17:582.52 . (2019). Проблемы ботаники Южной Сибири и Монголии, 18(1), 51-56. https://doi.org/10.14258/pbssm.2019009
